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GEO accession:
Sample GSM94333
Query DataSets for GSM94333
Status
Public on Jul 01, 2006
Title
PBMCs from an HIV positive transmitter mother in Botwana (1)
Sample type
RNA
Source name
Human peripheral blood mononuclear cells (PBMCs) from an HIV positive Batswana woman
Organism
Homo sapiens
Characteristics
Botswana mother between 17 and 44 years old. HIV positive. Transmitted virus to child.
Extracted molecule
total RNA
Label
biotin
Description
HIV seropositive and drug naive
HIV seropositive transmitter mothers
Data processing
Data scaled with GCOS
Submission date
Jan 30, 2006
Last update date
Sep 13, 2006
Contact name
Monty Montano
E-mail(s)
mmontano@bu.edu
Phone
617 414-4806
Fax
617 414-3561
URL
http://www.bmc.org/HIV-AIDS/MontyMontano.htm
Organization name
Boston Medical Center
Department
Medicine
Lab
Center for HIV-1/AIDS Care and Research
Street address
650 Albany Street, Bldg X, room 640
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Platform ID
GPL571
Series (1)
GSE4124
Gene-expression profiling of HIV-1 infection and perinatal transmission in Botswana
Data table header descriptions
ID_REF
VALUE
GCOS scaled intensity values
DETECTION_P-VALUE
Quality of measurement
ABS_CALL
Present, absent or marginal call
SCALED_VALUE
Scaled intensity values
Data table
ID_REF
VALUE
DETECTION_P-VALUE
ABS_CALL
SCALED_VALUE
1007_s_at
10.8
0.47938
A
40.94097833
1053_at
4.7
0.438361
A
17.81690724
117_at
44
0.000562
P
166.7965784
121_at
23.7
0.060419
M
89.84270245
1255_g_at
1.9
0.52062
A
7.202579521
1294_at
59.2
0.017001
P
224.4172146
1316_at
8.2
0.013092
P
31.08481688
1320_at
4.3
0.660468
A
16.30057471
1405_i_at
484.2
0.000762
P
1835.520529
1431_at
2.2
0.35869
A
8.339828919
1438_at
5.9
0.162935
A
22.36590483
1487_at
24.7
0.089405
A
93.63353378
1494_f_at
6.8
0.302547
A
25.77765302
1598_g_at
12.6
0.339558
A
47.76447472
160020_at
15.5
0.081337
A
58.75788557
1729_at
20.8
0.218983
A
78.8492916
177_at
4.7
0.218983
A
17.81690724
1773_at
0.6
0.795978
A
2.274498796
179_at
30.6
0.302547
A
115.9994386
1861_at
8
0.234557
A
30.32665062
Total number of rows:
22277
Table truncated, full table size
823 Kbytes
.
Supplementary data files not provided
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