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Sample GSM94295 Query DataSets for GSM94295
Status Public on Mar 16, 2006
Title TMD sample from patient with Down Syndrome_DSTMD014
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Transient myeloproliferative disease, Down Syndrome
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 139.4 P 8.57E-04
AFFX-BioB-M_at 288 P 4.40E-05
AFFX-BioB-3_at 164.2 P 5.20E-05
AFFX-BioC-5_at 388.2 P 1.10E-04
AFFX-BioC-3_at 294.4 P 7.00E-05
AFFX-BioDn-5_at 388.6 P 6.00E-05
AFFX-BioDn-3_at 2073.2 P 6.00E-05
AFFX-CreX-5_at 4030.5 P 4.40E-05
AFFX-CreX-3_at 6463.2 P 4.40E-05
AFFX-DapX-5_at 5.5 A 0.131361
AFFX-DapX-M_at 8.2 A 0.455413
AFFX-DapX-3_at 6.8 A 0.51489
AFFX-LysX-5_at 1.1 A 0.645547
AFFX-LysX-M_at 3.6 A 0.58862
AFFX-LysX-3_at 6.3 A 0.440646
AFFX-PheX-5_at 1 A 0.957038
AFFX-PheX-M_at 1.8 A 0.910522
AFFX-PheX-3_at 18.9 A 0.440646
AFFX-ThrX-5_at 2.6 A 0.772364
AFFX-ThrX-M_at 7.1 A 0.52976

Total number of rows: 22283

Table truncated, full table size 576 Kbytes.

Supplementary data files not provided

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