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Sample GSM94286 Query DataSets for GSM94286
Status Public on Mar 16, 2006
Title AMKL sample, Down-Syndrome_DSAMKL126
Sample type RNA
 
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL sample from patient with Down Syndrome
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
E-mail(s) jean-pierre.bourquin@kispi.unizh.ch
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
 
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 135.5 P 0.002275
AFFX-BioB-M_at 360.1 P 1.69E-04
AFFX-BioB-3_at 179.1 P 9.50E-05
AFFX-BioC-5_at 366.7 P 6.00E-05
AFFX-BioC-3_at 298.5 P 6.00E-05
AFFX-BioDn-5_at 305.2 P 7.00E-05
AFFX-BioDn-3_at 2275.8 P 6.00E-05
AFFX-CreX-5_at 3945.7 P 4.40E-05
AFFX-CreX-3_at 6686.5 P 4.40E-05
AFFX-DapX-5_at 1.1 A 0.41138
AFFX-DapX-M_at 7.3 A 0.313723
AFFX-DapX-3_at 1.9 A 0.910522
AFFX-LysX-5_at 0.7 A 0.749204
AFFX-LysX-M_at 2.2 A 0.772364
AFFX-LysX-3_at 7.3 A 0.382599
AFFX-PheX-5_at 0.8 A 0.949771
AFFX-PheX-M_at 2.3 A 0.686277
AFFX-PheX-3_at 3.3 A 0.737173
AFFX-ThrX-5_at 3.8 A 0.48511
AFFX-ThrX-M_at 1.1 A 0.916408

Total number of rows: 22283

Table truncated, full table size 576 Kbytes.




Supplementary data files not provided

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