GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM94285 Query DataSets for GSM94285
Status Public on Mar 16, 2006
Title AMKL sample, Down-Syndrome_DSAMKL125
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL sample from patient with Down Syndrome
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 116.5 P 0.00141
AFFX-BioB-M_at 306.4 P 1.27E-04
AFFX-BioB-3_at 142.9 P 4.46E-04
AFFX-BioC-5_at 365.3 P 1.27E-04
AFFX-BioC-3_at 244.9 P 6.00E-05
AFFX-BioDn-5_at 224.6 P 6.00E-05
AFFX-BioDn-3_at 1907.3 P 6.00E-05
AFFX-CreX-5_at 3219.4 P 4.40E-05
AFFX-CreX-3_at 5057 P 4.40E-05
AFFX-DapX-5_at 6.2 A 0.574038
AFFX-DapX-M_at 13.3 A 0.165861
AFFX-DapX-3_at 1.1 A 0.932322
AFFX-LysX-5_at 4.1 A 0.48511
AFFX-LysX-M_at 5.1 A 0.41138
AFFX-LysX-3_at 9.2 A 0.175307
AFFX-PheX-5_at 0.9 A 0.852061
AFFX-PheX-M_at 1.5 A 0.868639
AFFX-PheX-3_at 5.9 A 0.631562
AFFX-ThrX-5_at 5.5 A 0.58862
AFFX-ThrX-M_at 5.9 A 0.440646

Total number of rows: 22283

Table truncated, full table size 575 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap