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Sample GSM94280 Query DataSets for GSM94280
Status Public on Mar 16, 2006
Title AMKL sample, Down-Syndrome_DSAMKL070
Sample type RNA
 
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL sample from patient with Down Syndrome
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
E-mail(s) jean-pierre.bourquin@kispi.unizh.ch
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
 
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 160.5 P 8.57E-04
AFFX-BioB-M_at 384.8 P 3.90E-04
AFFX-BioB-3_at 159.3 P 2.97E-04
AFFX-BioC-5_at 498.8 P 1.27E-04
AFFX-BioC-3_at 445.1 P 7.00E-05
AFFX-BioDn-5_at 399.9 P 7.00E-05
AFFX-BioDn-3_at 3072.2 P 6.00E-05
AFFX-CreX-5_at 5741.4 P 4.40E-05
AFFX-CreX-3_at 9171.5 P 4.40E-05
AFFX-DapX-5_at 8.3 A 0.250796
AFFX-DapX-M_at 13.8 A 0.39692
AFFX-DapX-3_at 2.5 A 0.794268
AFFX-LysX-5_at 6.4 A 0.455413
AFFX-LysX-M_at 2.1 A 0.949771
AFFX-LysX-3_at 1 A 0.724854
AFFX-PheX-5_at 1.6 A 0.941556
AFFX-PheX-M_at 1.7 A 0.814869
AFFX-PheX-3_at 19 A 0.470241
AFFX-ThrX-5_at 2.2 A 0.804734
AFFX-ThrX-M_at 3.7 A 0.617401

Total number of rows: 22283

Table truncated, full table size 581 Kbytes.




Supplementary data files not provided

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