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Sample GSM94274 Query DataSets for GSM94274
Status Public on Mar 16, 2006
Title AMKL sample, Down-Syndrome_DSAMKL016
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL sample from patient with Down Syndrome
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 133.8 P 5.81E-04
AFFX-BioB-M_at 282.5 P 7.00E-05
AFFX-BioB-3_at 193.7 P 6.00E-05
AFFX-BioC-5_at 506.2 P 8.10E-05
AFFX-BioC-3_at 425.7 P 7.00E-05
AFFX-BioDn-5_at 466.4 P 6.00E-05
AFFX-BioDn-3_at 2278.6 P 5.20E-05
AFFX-CreX-5_at 4903.4 P 4.40E-05
AFFX-CreX-3_at 6601.3 P 4.40E-05
AFFX-DapX-5_at 7.6 A 0.147939
AFFX-DapX-M_at 17.5 A 0.102165
AFFX-DapX-3_at 1.6 A 0.883887
AFFX-LysX-5_at 6.3 A 0.659339
AFFX-LysX-M_at 12.1 A 0.617401
AFFX-LysX-3_at 6.5 A 0.327079
AFFX-PheX-5_at 0.7 A 0.966323
AFFX-PheX-M_at 5.5 A 0.699394
AFFX-PheX-3_at 7.4 A 0.631562
AFFX-ThrX-5_at 2.8 A 0.883887
AFFX-ThrX-M_at 7.9 A 0.340661

Total number of rows: 22283

Table truncated, full table size 577 Kbytes.

Supplementary data files not provided

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