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Sample GSM94267 Query DataSets for GSM94267
Status Public on Mar 16, 2006
Title AML patient sample_AML005
Sample type RNA
 
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AML diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
E-mail(s) jean-pierre.bourquin@kispi.unizh.ch
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
 
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 204.3 P 5.81E-04
AFFX-BioB-M_at 250.3 P 5.20E-05
AFFX-BioB-3_at 172.5 P 1.10E-04
AFFX-BioC-5_at 581.1 P 7.00E-05
AFFX-BioC-3_at 378.7 P 6.00E-05
AFFX-BioDn-5_at 474.6 P 5.20E-05
AFFX-BioDn-3_at 2155 P 4.40E-05
AFFX-CreX-5_at 5088.2 P 4.40E-05
AFFX-CreX-3_at 7899.6 P 4.40E-05
AFFX-DapX-5_at 6.9 A 0.262827
AFFX-DapX-M_at 3.6 A 0.60308
AFFX-DapX-3_at 1.2 A 0.891021
AFFX-LysX-5_at 0.9 A 0.876428
AFFX-LysX-M_at 13.2 A 0.559354
AFFX-LysX-3_at 1.8 A 0.672921
AFFX-PheX-5_at 2.2 A 0.724854
AFFX-PheX-M_at 0.8 A 0.963431
AFFX-PheX-3_at 6.1 A 0.544587
AFFX-ThrX-5_at 3 A 0.631562
AFFX-ThrX-M_at 2.7 A 0.783476

Total number of rows: 22283

Table truncated, full table size 576 Kbytes.




Supplementary data files not provided

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