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Sample GSM94266 Query DataSets for GSM94266
Status Public on Mar 16, 2006
Title AML patient sample_AML004
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AML diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 129 P 4.46E-04
AFFX-BioB-M_at 242.3 P 9.50E-05
AFFX-BioB-3_at 137.2 P 1.95E-04
AFFX-BioC-5_at 320.6 P 5.20E-05
AFFX-BioC-3_at 318.6 P 7.00E-05
AFFX-BioDn-5_at 305 P 9.50E-05
AFFX-BioDn-3_at 1671 P 5.20E-05
AFFX-CreX-5_at 3040.6 P 4.40E-05
AFFX-CreX-3_at 6227.5 P 4.40E-05
AFFX-DapX-5_at 6.8 A 0.368438
AFFX-DapX-M_at 9.5 A 0.368438
AFFX-DapX-3_at 1.8 A 0.949771
AFFX-LysX-5_at 2.7 A 0.814869
AFFX-LysX-M_at 5.8 A 0.631562
AFFX-LysX-3_at 2.4 A 0.60308
AFFX-PheX-5_at 1.2 A 0.824672
AFFX-PheX-M_at 0.5 A 0.971543
AFFX-PheX-3_at 10.9 A 0.340661
AFFX-ThrX-5_at 2.4 A 0.772364
AFFX-ThrX-M_at 11.1 A 0.300606

Total number of rows: 22283

Table truncated, full table size 577 Kbytes.

Supplementary data files not provided

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