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Sample GSM94265 Query DataSets for GSM94265
Status Public on Mar 16, 2006
Title AML patient sample_AML003
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AML diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 121 P 5.09E-04
AFFX-BioB-M_at 406.2 P 7.00E-05
AFFX-BioB-3_at 166.2 P 1.47E-04
AFFX-BioC-5_at 431.5 P 7.00E-05
AFFX-BioC-3_at 339.7 P 5.20E-05
AFFX-BioDn-5_at 427.7 P 7.00E-05
AFFX-BioDn-3_at 2163.8 P 5.20E-05
AFFX-CreX-5_at 3777.1 P 4.40E-05
AFFX-CreX-3_at 5029 P 4.40E-05
AFFX-DapX-5_at 0.8 A 0.724854
AFFX-DapX-M_at 2.4 A 0.749204
AFFX-DapX-3_at 1.7 A 0.910522
AFFX-LysX-5_at 3.1 A 0.354453
AFFX-LysX-M_at 6.5 A 0.631562
AFFX-LysX-3_at 7.4 A 0.262827
AFFX-PheX-5_at 1.4 A 0.868639
AFFX-PheX-M_at 1.8 A 0.824672
AFFX-PheX-3_at 27.1 A 0.165861
AFFX-ThrX-5_at 2.2 A 0.783476
AFFX-ThrX-M_at 1.5 A 0.760937

Total number of rows: 22283

Table truncated, full table size 576 Kbytes.

Supplementary data files not provided

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