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GEO accession:
Sample GSM94265
Query DataSets for GSM94265
Status
Public on Mar 16, 2006
Title
AML patient sample_AML003
Sample type
RNA
Source name
bone marrow or peripheral blood
Organism
Homo sapiens
Characteristics
diagnostic sample
Extracted molecule
total RNA
Extraction protocol
mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label
biotin
Label protocol
2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
AML diagnostic sample
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jan 30, 2006
Last update date
Mar 16, 2006
Contact name
Jean-Pierre Bourquin
E-mail(s)
jean-pierre.bourquin@kispi.unizh.ch
Phone
+41 44 266 7304
Fax
+41 44 266 7171
Organization name
University Children's Hospital Zurich
Department
Pediatric Oncology
Lab
Molecular Oncology
Street address
Steinwiesstrasse 75
City
Zurich
ZIP/Postal code
8032
Country
Switzerland
Platform ID
GPL96
Series (1)
GSE4119
Expression profiling of acute megakaryoblastic leukemia
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
121
P
5.09E-04
AFFX-BioB-M_at
406.2
P
7.00E-05
AFFX-BioB-3_at
166.2
P
1.47E-04
AFFX-BioC-5_at
431.5
P
7.00E-05
AFFX-BioC-3_at
339.7
P
5.20E-05
AFFX-BioDn-5_at
427.7
P
7.00E-05
AFFX-BioDn-3_at
2163.8
P
5.20E-05
AFFX-CreX-5_at
3777.1
P
4.40E-05
AFFX-CreX-3_at
5029
P
4.40E-05
AFFX-DapX-5_at
0.8
A
0.724854
AFFX-DapX-M_at
2.4
A
0.749204
AFFX-DapX-3_at
1.7
A
0.910522
AFFX-LysX-5_at
3.1
A
0.354453
AFFX-LysX-M_at
6.5
A
0.631562
AFFX-LysX-3_at
7.4
A
0.262827
AFFX-PheX-5_at
1.4
A
0.868639
AFFX-PheX-M_at
1.8
A
0.824672
AFFX-PheX-3_at
27.1
A
0.165861
AFFX-ThrX-5_at
2.2
A
0.783476
AFFX-ThrX-M_at
1.5
A
0.760937
Total number of rows:
22283
Table truncated, full table size
576 Kbytes
.
Supplementary data files not provided
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