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Sample GSM94260 Query DataSets for GSM94260
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL094
Sample type RNA
 
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
E-mail(s) jean-pierre.bourquin@kispi.unizh.ch
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
 
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 191.5 P 7.54E-04
AFFX-BioB-M_at 455.1 P 8.10E-05
AFFX-BioB-3_at 206.6 P 1.69E-04
AFFX-BioC-5_at 667.1 P 8.10E-05
AFFX-BioC-3_at 530.8 P 7.00E-05
AFFX-BioDn-5_at 479.2 P 5.20E-05
AFFX-BioDn-3_at 3650.7 P 6.00E-05
AFFX-CreX-5_at 7540 P 4.40E-05
AFFX-CreX-3_at 11446.2 P 4.40E-05
AFFX-DapX-5_at 4.3 A 0.48511
AFFX-DapX-M_at 14 A 0.39692
AFFX-DapX-3_at 9.3 A 0.724854
AFFX-LysX-5_at 3.9 A 0.60308
AFFX-LysX-M_at 16 A 0.58862
AFFX-LysX-3_at 0.9 A 0.772364
AFFX-PheX-5_at 1.1 A 0.937071
AFFX-PheX-M_at 2.2 A 0.868639
AFFX-PheX-3_at 43.3 A 0.382599
AFFX-ThrX-5_at 3.2 A 0.824672
AFFX-ThrX-M_at 15.6 A 0.275146

Total number of rows: 22283

Table truncated, full table size 583 Kbytes.




Supplementary data files not provided

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