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Sample GSM94258 Query DataSets for GSM94258
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL085
Sample type RNA
 
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
E-mail(s) jean-pierre.bourquin@kispi.unizh.ch
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
 
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 194.7 P 0.00141
AFFX-BioB-M_at 440.5 P 4.40E-05
AFFX-BioB-3_at 171.6 P 9.50E-05
AFFX-BioC-5_at 691.7 P 7.00E-05
AFFX-BioC-3_at 509.3 P 8.10E-05
AFFX-BioDn-5_at 477.4 P 5.20E-05
AFFX-BioDn-3_at 3230.4 P 5.20E-05
AFFX-CreX-5_at 6562.1 P 4.40E-05
AFFX-CreX-3_at 11262.5 P 4.40E-05
AFFX-DapX-5_at 6.5 A 0.425962
AFFX-DapX-M_at 11.8 A 0.41138
AFFX-DapX-3_at 1.2 A 0.984817
AFFX-LysX-5_at 3.5 A 0.544587
AFFX-LysX-M_at 2.7 A 0.852061
AFFX-LysX-3_at 1.3 A 0.645547
AFFX-PheX-5_at 1.5 A 0.921998
AFFX-PheX-M_at 2.3 A 0.883887
AFFX-PheX-3_at 28.4 A 0.250796
AFFX-ThrX-5_at 4.5 A 0.814869
AFFX-ThrX-M_at 3.8 A 0.724854

Total number of rows: 22283

Table truncated, full table size 584 Kbytes.




Supplementary data files not provided

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