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Sample GSM94256 Query DataSets for GSM94256
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL083
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 186.7 P 0.001102
AFFX-BioB-M_at 392.5 P 2.25E-04
AFFX-BioB-3_at 228.9 P 7.00E-05
AFFX-BioC-5_at 535.1 P 1.10E-04
AFFX-BioC-3_at 421.3 P 8.10E-05
AFFX-BioDn-5_at 390.4 P 8.10E-05
AFFX-BioDn-3_at 2838.2 P 6.00E-05
AFFX-CreX-5_at 5597.7 P 4.40E-05
AFFX-CreX-3_at 9368.4 P 4.40E-05
AFFX-DapX-5_at 7.6 A 0.354453
AFFX-DapX-M_at 11.6 A 0.41138
AFFX-DapX-3_at 2 A 0.916408
AFFX-LysX-5_at 7.8 A 0.205732
AFFX-LysX-M_at 13.9 A 0.51489
AFFX-LysX-3_at 1.6 A 0.559354
AFFX-PheX-5_at 1.5 A 0.868639
AFFX-PheX-M_at 0.9 A 0.957038
AFFX-PheX-3_at 5.7 A 0.794268
AFFX-ThrX-5_at 2.9 A 0.843268
AFFX-ThrX-M_at 11.7 A 0.48511

Total number of rows: 22283

Table truncated, full table size 580 Kbytes.

Supplementary data files not provided

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