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Sample GSM94255 Query DataSets for GSM94255
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL082
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 193.6 P 8.57E-04
AFFX-BioB-M_at 396.9 P 6.00E-05
AFFX-BioB-3_at 239.5 P 5.20E-05
AFFX-BioC-5_at 658.8 P 9.50E-05
AFFX-BioC-3_at 525.5 P 7.00E-05
AFFX-BioDn-5_at 454.1 P 5.20E-05
AFFX-BioDn-3_at 3027.6 P 6.00E-05
AFFX-CreX-5_at 6257.5 P 4.40E-05
AFFX-CreX-3_at 10780.3 P 4.40E-05
AFFX-DapX-5_at 14.4 A 0.078002
AFFX-DapX-M_at 10.8 A 0.574038
AFFX-DapX-3_at 2.9 A 0.699394
AFFX-LysX-5_at 14.3 A 0.239063
AFFX-LysX-M_at 14.5 A 0.39692
AFFX-LysX-3_at 1.9 A 0.737173
AFFX-PheX-5_at 1.1 A 0.976071
AFFX-PheX-M_at 7.9 A 0.544587
AFFX-PheX-3_at 8.9 A 0.645547
AFFX-ThrX-5_at 2.7 A 0.876448
AFFX-ThrX-M_at 9.4 A 0.659339

Total number of rows: 22283

Table truncated, full table size 582 Kbytes.

Supplementary data files not provided

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