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Sample GSM94249 Query DataSets for GSM94249
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL067
Sample type RNA
 
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
E-mail(s) jean-pierre.bourquin@kispi.unizh.ch
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
 
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 216.5 P 7.54E-04
AFFX-BioB-M_at 380.6 P 6.00E-05
AFFX-BioB-3_at 179.8 P 5.20E-05
AFFX-BioC-5_at 584.9 P 7.00E-05
AFFX-BioC-3_at 417 P 6.00E-05
AFFX-BioDn-5_at 429.5 P 5.20E-05
AFFX-BioDn-3_at 2330.9 P 5.20E-05
AFFX-CreX-5_at 5473.5 P 4.40E-05
AFFX-CreX-3_at 9296.7 P 4.40E-05
AFFX-DapX-5_at 7.4 A 0.250796
AFFX-DapX-M_at 15.1 A 0.195266
AFFX-DapX-3_at 2.8 A 0.772364
AFFX-LysX-5_at 0.7 A 0.976071
AFFX-LysX-M_at 2.5 A 0.834139
AFFX-LysX-3_at 6.1 A 0.470241
AFFX-PheX-5_at 1.7 A 0.814869
AFFX-PheX-M_at 3 A 0.737173
AFFX-PheX-3_at 3 A 0.904333
AFFX-ThrX-5_at 3.7 A 0.737173
AFFX-ThrX-M_at 5.4 A 0.617401

Total number of rows: 22283

Table truncated, full table size 580 Kbytes.




Supplementary data files not provided

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