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Sample GSM94248 Query DataSets for GSM94248
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL066
Sample type RNA
 
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
E-mail(s) jean-pierre.bourquin@kispi.unizh.ch
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
 
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 165.3 P 0.002023
AFFX-BioB-M_at 458.6 P 9.50E-05
AFFX-BioB-3_at 194.7 P 1.95E-04
AFFX-BioC-5_at 651.4 P 7.00E-05
AFFX-BioC-3_at 527.3 P 7.00E-05
AFFX-BioDn-5_at 404.3 P 8.10E-05
AFFX-BioDn-3_at 3201.4 P 7.00E-05
AFFX-CreX-5_at 7067 P 4.40E-05
AFFX-CreX-3_at 10528.2 P 4.40E-05
AFFX-DapX-5_at 18.7 A 0.102165
AFFX-DapX-M_at 10.1 A 0.455413
AFFX-DapX-3_at 4.3 A 0.783476
AFFX-LysX-5_at 6.3 A 0.425962
AFFX-LysX-M_at 5.4 A 0.58862
AFFX-LysX-3_at 8.6 A 0.287743
AFFX-PheX-5_at 11.7 A 0.760937
AFFX-PheX-M_at 2.4 A 0.824672
AFFX-PheX-3_at 6.3 A 0.724854
AFFX-ThrX-5_at 4 A 0.631562
AFFX-ThrX-M_at 18.4 A 0.440646

Total number of rows: 22283

Table truncated, full table size 584 Kbytes.




Supplementary data files not provided

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