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Sample GSM94242 Query DataSets for GSM94242
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL049
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 71.4 P 0.006871
AFFX-BioB-M_at 117.7 P 0.002023
AFFX-BioB-3_at 59.5 P 0.004017
AFFX-BioC-5_at 220.3 P 2.97E-04
AFFX-BioC-3_at 154.3 P 1.10E-04
AFFX-BioDn-5_at 128.7 P 9.72E-04
AFFX-BioDn-3_at 1387.7 P 1.69E-04
AFFX-CreX-5_at 2224.2 P 4.40E-05
AFFX-CreX-3_at 4172.2 P 4.40E-05
AFFX-DapX-5_at 3.1 A 0.51489
AFFX-DapX-M_at 14.3 A 0.250796
AFFX-DapX-3_at 2.4 A 0.963431
AFFX-LysX-5_at 1.2 A 0.749204
AFFX-LysX-M_at 2.9 A 0.814869
AFFX-LysX-3_at 6.2 A 0.544587
AFFX-PheX-5_at 1.7 A 0.971543
AFFX-PheX-M_at 8.3 A 0.724854
AFFX-PheX-3_at 7.2 A 0.760937
AFFX-ThrX-5_at 17.1 A 0.559354
AFFX-ThrX-M_at 14 A 0.185131

Total number of rows: 22283

Table truncated, full table size 579 Kbytes.

Supplementary data files not provided

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