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Sample GSM94239 Query DataSets for GSM94239
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL046
Sample type RNA
 
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
E-mail(s) jean-pierre.bourquin@kispi.unizh.ch
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
 
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 79 P 0.015183
AFFX-BioB-M_at 105.2 P 0.001796
AFFX-BioB-3_at 59.5 P 0.013811
AFFX-BioC-5_at 202 P 2.97E-04
AFFX-BioC-3_at 105.4 P 3.90E-04
AFFX-BioDn-5_at 130.1 P 0.002023
AFFX-BioDn-3_at 1289 P 3.40E-04
AFFX-CreX-5_at 2011.5 P 4.40E-05
AFFX-CreX-3_at 3664 P 4.40E-05
AFFX-DapX-5_at 22.2 P 0.00762
AFFX-DapX-M_at 29.4 A 0.095667
AFFX-DapX-3_at 2.1 A 0.971543
AFFX-LysX-5_at 6.9 A 0.737173
AFFX-LysX-M_at 18.9 A 0.455413
AFFX-LysX-3_at 3 A 0.354453
AFFX-PheX-5_at 1.7 A 0.949771
AFFX-PheX-M_at 3.2 A 0.783476
AFFX-PheX-3_at 9.7 A 0.51489
AFFX-ThrX-5_at 4.4 A 0.559354
AFFX-ThrX-M_at 19.3 A 0.227636

Total number of rows: 22283

Table truncated, full table size 582 Kbytes.




Supplementary data files not provided

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