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Sample GSM94233 Query DataSets for GSM94233
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL039
Sample type RNA
 
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
E-mail(s) jean-pierre.bourquin@kispi.unizh.ch
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
 
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 38.4 A 0.0727
AFFX-BioB-M_at 86.8 P 0.003212
AFFX-BioB-3_at 37.8 P 0.046482
AFFX-BioC-5_at 135.3 P 3.40E-04
AFFX-BioC-3_at 80.7 P 3.90E-04
AFFX-BioDn-5_at 85.2 P 0.00844
AFFX-BioDn-3_at 771.1 P 5.09E-04
AFFX-CreX-5_at 1214 P 4.40E-05
AFFX-CreX-3_at 2171.1 P 4.40E-05
AFFX-DapX-5_at 7.1 A 0.39692
AFFX-DapX-M_at 15.7 A 0.108979
AFFX-DapX-3_at 1.8 A 0.897835
AFFX-LysX-5_at 1 A 0.916408
AFFX-LysX-M_at 3.1 A 0.804734
AFFX-LysX-3_at 1.5 A 0.631562
AFFX-PheX-5_at 1.4 A 0.969024
AFFX-PheX-M_at 2.3 A 0.699394
AFFX-PheX-3_at 14.6 A 0.574038
AFFX-ThrX-5_at 2.3 A 0.794268
AFFX-ThrX-M_at 3.8 A 0.686277

Total number of rows: 22283

Table truncated, full table size 577 Kbytes.




Supplementary data files not provided

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