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Sample GSM94231 Query DataSets for GSM94231
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL037
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 150.9 P 5.81E-04
AFFX-BioB-M_at 461.4 P 9.50E-05
AFFX-BioB-3_at 179.2 P 4.40E-05
AFFX-BioC-5_at 419.7 P 1.10E-04
AFFX-BioC-3_at 374.3 P 7.00E-05
AFFX-BioDn-5_at 391.4 P 5.20E-05
AFFX-BioDn-3_at 2459.5 P 5.20E-05
AFFX-CreX-5_at 3869.8 P 4.40E-05
AFFX-CreX-3_at 6435.3 P 4.40E-05
AFFX-DapX-5_at 15.8 P 0.021902
AFFX-DapX-M_at 6.5 A 0.354453
AFFX-DapX-3_at 4.2 A 0.783476
AFFX-LysX-5_at 8.5 A 0.425962
AFFX-LysX-M_at 2.6 A 0.659339
AFFX-LysX-3_at 1.9 A 0.5
AFFX-PheX-5_at 0.6 A 0.973889
AFFX-PheX-M_at 6.9 A 0.559354
AFFX-PheX-3_at 4.6 A 0.672921
AFFX-ThrX-5_at 2 A 0.843268
AFFX-ThrX-M_at 8.6 A 0.51489

Total number of rows: 22283

Table truncated, full table size 578 Kbytes.

Supplementary data files not provided

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