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Sample GSM94229 Query DataSets for GSM94229
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL035
Sample type RNA
 
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
E-mail(s) jean-pierre.bourquin@kispi.unizh.ch
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
 
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 184.7 P 0.004998
AFFX-BioB-M_at 426.4 P 6.00E-05
AFFX-BioB-3_at 149.3 P 7.00E-05
AFFX-BioC-5_at 454.3 P 9.50E-05
AFFX-BioC-3_at 281.2 P 5.20E-05
AFFX-BioDn-5_at 357.3 P 5.20E-05
AFFX-BioDn-3_at 2056 P 6.00E-05
AFFX-CreX-5_at 4122 P 4.40E-05
AFFX-CreX-3_at 6240.9 P 4.40E-05
AFFX-DapX-5_at 9.9 A 0.195266
AFFX-DapX-M_at 13.8 A 0.0727
AFFX-DapX-3_at 1 A 0.941556
AFFX-LysX-5_at 5.7 A 0.455413
AFFX-LysX-M_at 17.1 A 0.455413
AFFX-LysX-3_at 1.7 A 0.760937
AFFX-PheX-5_at 0.8 A 0.957038
AFFX-PheX-M_at 2.7 A 0.699394
AFFX-PheX-3_at 6.1 A 0.672921
AFFX-ThrX-5_at 2.3 A 0.868639
AFFX-ThrX-M_at 1.4 A 0.966323

Total number of rows: 22283

Table truncated, full table size 578 Kbytes.




Supplementary data files not provided

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