GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM94227 Query DataSets for GSM94227
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL032
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 82.3 P 0.005565
AFFX-BioB-M_at 317.5 P 2.58E-04
AFFX-BioB-3_at 148.6 P 2.58E-04
AFFX-BioC-5_at 410.4 P 1.95E-04
AFFX-BioC-3_at 296.5 P 1.47E-04
AFFX-BioDn-5_at 285.3 P 6.00E-05
AFFX-BioDn-3_at 2284.9 P 1.10E-04
AFFX-CreX-5_at 4152.8 P 4.40E-05
AFFX-CreX-3_at 6021.1 P 4.40E-05
AFFX-DapX-5_at 14.5 A 0.102165
AFFX-DapX-M_at 13.3 A 0.250796
AFFX-DapX-3_at 3.5 A 0.794268
AFFX-LysX-5_at 4.3 A 0.559354
AFFX-LysX-M_at 12.1 A 0.574038
AFFX-LysX-3_at 1.4 A 0.772364
AFFX-PheX-5_at 3.2 A 0.783476
AFFX-PheX-M_at 3.7 A 0.824672
AFFX-PheX-3_at 6.4 A 0.724854
AFFX-ThrX-5_at 4.6 A 0.783476
AFFX-ThrX-M_at 6.8 A 0.51489

Total number of rows: 22283

Table truncated, full table size 583 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap