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Sample GSM94224 Query DataSets for GSM94224
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL028
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 112.8 P 8.57E-04
AFFX-BioB-M_at 206.7 P 1.47E-04
AFFX-BioB-3_at 122.9 P 8.57E-04
AFFX-BioC-5_at 399.9 P 1.10E-04
AFFX-BioC-3_at 289.3 P 7.00E-05
AFFX-BioDn-5_at 289.3 P 5.20E-05
AFFX-BioDn-3_at 1981.1 P 9.50E-05
AFFX-CreX-5_at 3332.3 P 4.40E-05
AFFX-CreX-3_at 5856.7 P 4.40E-05
AFFX-DapX-5_at 7 A 0.250796
AFFX-DapX-M_at 11 A 0.195266
AFFX-DapX-3_at 1.5 A 0.957038
AFFX-LysX-5_at 2.8 A 0.645547
AFFX-LysX-M_at 2.9 A 0.712257
AFFX-LysX-3_at 1.2 A 0.699394
AFFX-PheX-5_at 5.3 A 0.544587
AFFX-PheX-M_at 0.9 A 0.897835
AFFX-PheX-3_at 6.9 A 0.48511
AFFX-ThrX-5_at 2 A 0.876428
AFFX-ThrX-M_at 13.9 A 0.340661

Total number of rows: 22283

Table truncated, full table size 580 Kbytes.

Supplementary data files not provided

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