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Sample GSM940 Query DataSets for GSM940
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time0.0hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.1
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n61
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 332 304 148 439 103 389 336 378 115 493 .878 0 -.364 .857 13 10 1.437 1.287 .696 .777 .693 1122 69 13 24 54 65 -.364
2 304 304 971 1238 910 333 328 369 1022 1391 .958 0 .074 .987 49 50 1.067 .95 .937 1.053 .925 927 69 12 23 64 75 .074
3 303 304 576 858 530 334 328 369 595 964 .933 0 .047 .842 46 43 1.087 .968 .92 1.033 .836 827 69 12 23 74 85 .047
4 303 304 80 400 64 336 336 378 71 449 .867 0 -.172 .79 18 14 1.25 1.127 .8 .888 .815 827 69 12 23 84 95 -.172
5 302 304 998 2515 2187 331 328 369 2457 2826 .93 0 1.3 2.338 50 63 .456 .406 2.191 2.462 1.947 827 69 12 23 94 105 1.3
6 329 304 129 437 101 447 336 378 113 491 .848 0 -.191 .849 28 23 1.277 1.142 .783 .876 .758 827 69 12 23 104 115 -.191
7 332 304 327 598 262 447 336 378 294 672 .896 0 -.153 .811 42 37 1.248 1.112 .801 .899 .855 827 69 12 23 114 125 -.153
8 331 304 206 522 186 445 336 378 209 587 .898 0 .021 .857 50 50 1.108 .986 .903 1.015 .775 827 69 12 23 124 135 .021
9 333 304 82 393 57 450 336 378 64 442 .913 0 -.358 .83 17 14 1.439 1.281 .695 .78 .943 827 69 12 23 134 145 -.358
10 313 304 123 426 90 337 336 378 101 479 .844 0 -.284 .8 28 20 1.367 1.218 .732 .821 .625 827 69 12 23 144 155 -.284
11 314 312 139 446 110 346 336 378 123 501 .862 0 -.176 1 21 17 1.264 1.13 .791 .885 .733 827 69 12 23 154 165 -.176
12 313 304 139 427 91 346 336 378 102 480 .906 0 -.447 .774 27 21 1.527 1.363 .655 .734 .731 827 69 12 23 164 175 -.447
13 312 304 34 361 25 347 336 378 28 406 .752 0 -.28 .5 7 5 1.36 1.214 .735 .824 .595 827 69 12 23 174 185 -.28
14 330 304 83 383 47 366 336 378 52 430 .703 0 -.675 1 10 8 1.766 1.596 .566 .627 .594 827 69 12 23 184 195 -.675
15 347 304 311 563 227 376 336 378 255 633 .936 0 -.286 1.044 21 23 1.37 1.22 .73 .82 .682 827 69 12 23 194 205 -.286
16 347 304 540 788 444 378 344 387 498 885 .947 0 -.117 .96 23 26 1.216 1.084 .822 .922 .818 827 69 12 23 204 215 -.117
17 354 304 142 440 104 381 336 378 116 494 .822 0 -.292 .85 23 18 1.365 1.224 .732 .817 .586 832 69 12 23 214 225 -.292
18 359 304 36 347 11 363 336 378 12 390 .296 0 -1.585 1.083 7 1 3.273 3 .306 .333 .242 832 69 12 23 224 235 -1.585
19 337 304 24687 518 182 342 336 378 204 582 0 0 -6.919 .01 84 39 135.643 121.015 .007 .008 0 841 69 12 23 234 245 -6.919
20 336 304 547 2984 2648 341 336 378 2975 3353 .84 0 2.443 3.992 59 66 .207 .184 4.841 5.439 4.173 841 69 12 23 244 255 2.443

Total number of rows: 7680

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
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