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GEO accession:
Sample GSM93892
Query DataSets for GSM93892
Status
Public on Aug 29, 2006
Title
Myotubes_rep3, chip HG-U133B
Sample type
RNA
Source name
myotubes
Organism
Homo sapiens
Characteristics
Fetal skeletal myoblasts
Growth protocol
Cultured in SKGM-2 media
Extracted molecule
total RNA
Extraction protocol
RNA prep method: RNeasy
Label
Biotin
Scan protocol
GeneArray 2500 scanner
Description
The goal is to study the genome-wide mapping of histone modifications in differentiating human primary myoblasts.
Data processing
MicroArray Suite 5.0
Submission date
Jan 26, 2006
Last update date
Aug 29, 2006
Organization
Ottawa Hospital Research Institute
Phone
(613) 737-8899 -73255
Department
Cellular and Molecular Medicine
Lab
Ottawa Bioinformatics Core Facility
Street address
501 Smyth Rd.
City
Ottawa
State/province
ON
ZIP/Postal code
K1H 8L6
Country
Canada
Platform ID
GPL97
Series (2)
GSE4131
Determination of myotube and myoblast expression levels
GSE4133
The Genome Wide Distribution of Acetylated Histone H4 Remodelled through Human Primary Myoblast Differentiation
Data table header descriptions
ID_REF
VALUE
signal intensity
ABS_CALL
present or absent
DETECTION P-VALUE
p-value for absent/present
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
22893.7
P
0.000225
AFFX-BioB-M_at
50486.7
P
0.000044
AFFX-BioB-3_at
28219.4
P
0.000052
AFFX-BioC-5_at
56318.1
P
0.000052
AFFX-BioC-3_at
44559.7
P
0.000044
AFFX-BioDn-5_at
47856.0
P
0.000044
AFFX-BioDn-3_at
218851.1
P
0.000044
AFFX-CreX-5_at
563089.1
P
0.000044
AFFX-CreX-3_at
737804.6
P
0.000044
AFFX-DapX-5_at
73621.0
P
0.000044
AFFX-DapX-M_at
568347.0
P
0.000044
AFFX-DapX-3_at
679121.6
P
0.000044
AFFX-LysX-5_at
50902.5
P
0.000044
AFFX-LysX-M_at
327167.5
P
0.000044
AFFX-LysX-3_at
615433.5
P
0.000044
AFFX-PheX-5_at
17352.2
P
0.000044
AFFX-PheX-M_at
40350.3
P
0.000052
AFFX-PheX-3_at
239009.5
P
0.000044
AFFX-ThrX-5_at
4026.7
P
0.003212
AFFX-ThrX-M_at
10228.7
P
0.000070
Total number of rows:
22645
Table truncated, full table size
613 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM93892.CEL.gz
3.0 Mb
(ftp)
(http)
CEL
GSM93892.EXP.gz
507 b
(ftp)
(http)
EXP
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