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GEO accession:
Sample GSM93885
Query DataSets for GSM93885
Status
Public on Aug 29, 2006
Title
Myoblasts_rep3, chip HG-U133A
Sample type
RNA
Source name
myoblasts
Organism
Homo sapiens
Characteristics
Fetal skeletal myoblasts
Growth protocol
Cultured in SKGM-2 media
Extracted molecule
cytoplasmic RNA
Extraction protocol
RNA prep method: RNeasy
Label
Biotin
Scan protocol
GeneArray 2500 scanner
Description
The goal is to study the genome-wide mapping of histone modifications in differentiating human primary myoblasts.
Data processing
MicroArray Suite 5.0
Submission date
Jan 26, 2006
Last update date
Aug 29, 2006
Organization
Ottawa Hospital Research Institute
Phone
(613) 737-8899 -73255
Department
Cellular and Molecular Medicine
Lab
Ottawa Bioinformatics Core Facility
Street address
501 Smyth Rd.
City
Ottawa
State/province
ON
ZIP/Postal code
K1H 8L6
Country
Canada
Platform ID
GPL96
Series (2)
GSE4131
Determination of myotube and myoblast expression levels
GSE4133
The Genome Wide Distribution of Acetylated Histone H4 Remodelled through Human Primary Myoblast Differentiation
Data table header descriptions
ID_REF
VALUE
signal intensity
ABS_CALL
present or absent call
DETECTION P-VALUE
p-value for absent/present
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
3468.3
P
0.001248
AFFX-BioB-M_at
8215.9
P
0.000060
AFFX-BioB-3_at
6451.0
P
0.000052
AFFX-BioC-5_at
11472.8
P
0.000081
AFFX-BioC-3_at
7917.0
P
0.000095
AFFX-BioDn-5_at
7819.7
P
0.000044
AFFX-BioDn-3_at
57774.0
P
0.000052
AFFX-CreX-5_at
105362.0
P
0.000044
AFFX-CreX-3_at
165767.6
P
0.000044
AFFX-DapX-5_at
24352.7
P
0.000044
AFFX-DapX-M_at
177477.9
P
0.000044
AFFX-DapX-3_at
231427.2
P
0.000044
AFFX-LysX-5_at
15174.2
P
0.000044
AFFX-LysX-M_at
94756.5
P
0.000044
AFFX-LysX-3_at
205347.9
P
0.000044
AFFX-PheX-5_at
6257.1
P
0.000070
AFFX-PheX-M_at
15275.2
P
0.000044
AFFX-PheX-3_at
89365.6
P
0.000044
AFFX-ThrX-5_at
669.6
P
0.018281
AFFX-ThrX-M_at
2758.9
P
0.000070
Total number of rows:
22283
Table truncated, full table size
612 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM93885.CEL.gz
3.2 Mb
(ftp)
(http)
CEL
GSM93885.EXP.gz
507 b
(ftp)
(http)
EXP
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