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Sample GSM938064 Query DataSets for GSM938064
Status Public on Jun 17, 2014
Title G3361-ABCB5-KD Rep3
Sample type RNA
Source name Melanoma cell-line, G3361, ABCB5 shRNA
Organism Homo sapiens
Characteristics cell line: G3361
cell type: pigmented melanoma
Extracted molecule total RNA
Extraction protocol Qiagen miniprep kit with additional 15min on-column DNaseI digestion
Label biotin
Label protocol Refer to Dana Farber Cancer Institute Microarray Core
Hybridization protocol Refer to Dana Farber Cancer Institute Microarray Core
Scan protocol Refer to Dana Farber Cancer Institute Microarray Core
Data processing Refer to Dana Farber Cancer Institute Microarray Core
Submission date May 29, 2012
Last update date Jun 19, 2014
Contact name Markus Hermann Frank
Phone 617-919-2993
Organization name Boston Children's Hospital
Department Medicine
Lab Frank Laboratory
Street address 300 Longwood Avenue
City Boston
State/province Massachusetts
ZIP/Postal code 02115
Country USA
Platform ID GPL571
Series (1)
GSE38290 Functional analysis of ABCB5 in melanoma cells

Data table header descriptions

Data table
AFFX-BioB-5_at 446.4 P 0.000662
AFFX-BioB-M_at 771.0 P 0.000060
AFFX-BioB-3_at 391.0 P 0.000095
AFFX-BioC-5_at 1433.4 P 0.000060
AFFX-BioC-3_at 1602.7 P 0.000044
AFFX-BioDn-5_at 2379.7 P 0.000052
AFFX-BioDn-3_at 6354.6 P 0.000258
AFFX-CreX-5_at 18575.3 P 0.000052
AFFX-CreX-3_at 18537.2 P 0.000044
AFFX-DapX-5_at 13.9 A 0.313723
AFFX-DapX-M_at 12.6 A 0.559354
AFFX-DapX-3_at 2.2 A 0.927300
AFFX-LysX-5_at 6.9 A 0.411380
AFFX-LysX-M_at 2.4 A 0.897835
AFFX-LysX-3_at 3.6 A 0.617401
AFFX-PheX-5_at 1.6 A 0.945787
AFFX-PheX-M_at 1.8 A 0.937071
AFFX-PheX-3_at 5.3 A 0.921998
AFFX-ThrX-5_at 9.4 A 0.659339
AFFX-ThrX-M_at 2.9 A 0.891021

Total number of rows: 22277

Table truncated, full table size 597 Kbytes.

Supplementary file Size Download File type/resource
GSM938064_G3361_ABCB5_KO3.CEL.gz 2.3 Mb (ftp)(http) CEL
GSM938064_MF2010021828.EXP.gz 377 b (ftp)(http) EXP
GSM938064_MF2010021828.TXT.gz 236.4 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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