GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM938063 Query DataSets for GSM938063
Status Public on Jun 17, 2014
Title G3361-ABCB5-KD Rep2
Sample type RNA
Source name Melanoma cell-line, G3361, ABCB5 shRNA
Organism Homo sapiens
Characteristics cell line: G3361
cell type: pigmented melanoma
Extracted molecule total RNA
Extraction protocol Qiagen miniprep kit with additional 15min on-column DNaseI digestion
Label biotin
Label protocol Refer to Dana Farber Cancer Institute Microarray Core
Hybridization protocol Refer to Dana Farber Cancer Institute Microarray Core
Scan protocol Refer to Dana Farber Cancer Institute Microarray Core
Data processing Refer to Dana Farber Cancer Institute Microarray Core
Submission date May 29, 2012
Last update date Jun 19, 2014
Contact name Markus Hermann Frank
Phone 617-919-2993
Organization name Boston Children's Hospital
Department Medicine
Lab Frank Laboratory
Street address 300 Longwood Avenue
City Boston
State/province Massachusetts
ZIP/Postal code 02115
Country USA
Platform ID GPL571
Series (1)
GSE38290 Functional analysis of ABCB5 in melanoma cells

Data table header descriptions

Data table
AFFX-BioB-5_at 426.3 P 0.000446
AFFX-BioB-M_at 667.6 P 0.000060
AFFX-BioB-3_at 429.7 P 0.000081
AFFX-BioC-5_at 1255.7 P 0.000110
AFFX-BioC-3_at 1547.8 P 0.000044
AFFX-BioDn-5_at 2304.4 P 0.000052
AFFX-BioDn-3_at 6079.1 P 0.000225
AFFX-CreX-5_at 19164.5 P 0.000060
AFFX-CreX-3_at 18806.5 P 0.000044
AFFX-DapX-5_at 2.5 A 0.749204
AFFX-DapX-M_at 6.5 A 0.672921
AFFX-DapX-3_at 2.6 A 0.916408
AFFX-LysX-5_at 1.3 A 0.794268
AFFX-LysX-M_at 1.8 A 0.953518
AFFX-LysX-3_at 8.9 A 0.139482
AFFX-PheX-5_at 1.1 A 0.941556
AFFX-PheX-M_at 1.7 A 0.876428
AFFX-PheX-3_at 31.4 A 0.368438
AFFX-ThrX-5_at 3.7 A 0.843268
AFFX-ThrX-M_at 7.3 A 0.737173

Total number of rows: 22277

Table truncated, full table size 597 Kbytes.

Supplementary file Size Download File type/resource
GSM938063_G3361_ABCB5_KO2.CEL.gz 2.3 Mb (ftp)(http) CEL
GSM938063_MF2010021827.EXP.gz 380 b (ftp)(http) EXP
GSM938063_MF2010021827.TXT.gz 236.2 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap