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Sample GSM938058 Query DataSets for GSM938058
Status Public on Jun 17, 2014
Title A375-ABCB5-KD Rep3
Sample type RNA
Source name Melanoma cell-line, A375, ABCB5 shRNA
Organism Homo sapiens
Characteristics cell line: A375
cell type: non-pigmented melanoma
Extracted molecule total RNA
Extraction protocol Qiagen miniprep kit with additional 15min on-column DNaseI digestion
Label biotin
Label protocol Refer to Dana Farber Cancer Institute Microarray Core
Hybridization protocol Refer to Dana Farber Cancer Institute Microarray Core
Scan protocol Refer to Dana Farber Cancer Institute Microarray Core
Data processing Refer to Dana Farber Cancer Institute Microarray Core
Submission date May 29, 2012
Last update date Jun 19, 2014
Contact name Markus Hermann Frank
Phone 617-919-2993
Organization name Boston Children's Hospital
Department Medicine
Lab Frank Laboratory
Street address 300 Longwood Avenue
City Boston
State/province Massachusetts
ZIP/Postal code 02115
Country USA
Platform ID GPL571
Series (1)
GSE38290 Functional analysis of ABCB5 in melanoma cells

Data table header descriptions

Data table
AFFX-BioB-5_at 328.1 P 0.000509
AFFX-BioB-M_at 516.7 P 0.000052
AFFX-BioB-3_at 390.2 P 0.000081
AFFX-BioC-5_at 1007.7 P 0.000225
AFFX-BioC-3_at 1209.6 P 0.000044
AFFX-BioDn-5_at 1824.1 P 0.000060
AFFX-BioDn-3_at 4699.8 P 0.000340
AFFX-CreX-5_at 15701.0 P 0.000052
AFFX-CreX-3_at 16490.7 P 0.000044
AFFX-DapX-5_at 1.8 A 0.749204
AFFX-DapX-M_at 7.4 A 0.588627
AFFX-DapX-3_at 1.7 A 0.979978
AFFX-LysX-5_at 0.9 A 0.860518
AFFX-LysX-M_at 9.3 A 0.749204
AFFX-LysX-3_at 11.1 A 0.102165
AFFX-PheX-5_at 1.2 A 0.971543
AFFX-PheX-M_at 2.0 A 0.904333
AFFX-PheX-3_at 8.7 A 0.712257
AFFX-ThrX-5_at 3.7 A 0.932322
AFFX-ThrX-M_at 1.7 A 0.945787

Total number of rows: 22277

Table truncated, full table size 597 Kbytes.

Supplementary file Size Download File type/resource
GSM938058_A375_ABCB5_KO3.CEL.gz 2.2 Mb (ftp)(http) CEL
GSM938058_MF2010021822.EXP.gz 378 b (ftp)(http) EXP
GSM938058_MF2010021822.TXT.gz 236.0 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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