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Sample GSM938057 Query DataSets for GSM938057
Status Public on Jun 17, 2014
Title A375-ABCB5-KD Rep2
Sample type RNA
Source name Melanoma cell-line, A375, ABCB5 shRNA
Organism Homo sapiens
Characteristics cell line: A375
cell type: non-pigmented melanoma
Extracted molecule total RNA
Extraction protocol Qiagen miniprep kit with additional 15min on-column DNaseI digestion
Label biotin
Label protocol Refer to Dana Farber Cancer Institute Microarray Core
Hybridization protocol Refer to Dana Farber Cancer Institute Microarray Core
Scan protocol Refer to Dana Farber Cancer Institute Microarray Core
Data processing Refer to Dana Farber Cancer Institute Microarray Core
Submission date May 29, 2012
Last update date Jun 19, 2014
Contact name Markus Hermann Frank
Phone 617-919-2993
Organization name Boston Children's Hospital
Department Medicine
Lab Frank Laboratory
Street address 300 Longwood Avenue
City Boston
State/province Massachusetts
ZIP/Postal code 02115
Country USA
Platform ID GPL571
Series (1)
GSE38290 Functional analysis of ABCB5 in melanoma cells

Data table header descriptions

Data table
AFFX-BioB-5_at 344.5 P 0.000662
AFFX-BioB-M_at 628.8 P 0.000070
AFFX-BioB-3_at 408.5 P 0.000095
AFFX-BioC-5_at 1126.6 P 0.000110
AFFX-BioC-3_at 1244.5 P 0.000044
AFFX-BioDn-5_at 1998.2 P 0.000052
AFFX-BioDn-3_at 5358.9 P 0.000258
AFFX-CreX-5_at 16437.3 P 0.000052
AFFX-CreX-3_at 16679.6 P 0.000044
AFFX-DapX-5_at 15.2 A 0.216524
AFFX-DapX-M_at 3.6 A 0.603080
AFFX-DapX-3_at 14.8 A 0.783476
AFFX-LysX-5_at 12.9 A 0.123552
AFFX-LysX-M_at 2.9 A 0.891021
AFFX-LysX-3_at 1.1 A 0.794268
AFFX-PheX-5_at 1.2 A 0.937071
AFFX-PheX-M_at 1.3 A 0.876428
AFFX-PheX-3_at 5.6 A 0.783476
AFFX-ThrX-5_at 21.9 A 0.672921
AFFX-ThrX-M_at 6.2 A 0.617401

Total number of rows: 22277

Table truncated, full table size 596 Kbytes.

Supplementary file Size Download File type/resource
GSM938057_A375_ABCB5_KO2.CEL.gz 2.2 Mb (ftp)(http) CEL
GSM938057_MF2010021821.EXP.gz 379 b (ftp)(http) EXP
GSM938057_MF2010021821.TXT.gz 235.3 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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