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Sample GSM938056 Query DataSets for GSM938056
Status Public on Jun 17, 2014
Title A375-ABCB5-KD Rep1
Sample type RNA
Source name Melanoma cell-line, A375, ABCB5 shRNA
Organism Homo sapiens
Characteristics cell line: A375
cell type: non-pigmented melanoma
Extracted molecule total RNA
Extraction protocol Qiagen miniprep kit with additional 15min on-column DNaseI digestion
Label biotin
Label protocol Refer to Dana Farber Cancer Institute Microarray Core
Hybridization protocol Refer to Dana Farber Cancer Institute Microarray Core
Scan protocol Refer to Dana Farber Cancer Institute Microarray Core
Data processing Refer to Dana Farber Cancer Institute Microarray Core
Submission date May 29, 2012
Last update date Jun 19, 2014
Contact name Markus Hermann Frank
Phone 617-919-2993
Organization name Boston Children's Hospital
Department Medicine
Lab Frank Laboratory
Street address 300 Longwood Avenue
City Boston
State/province Massachusetts
ZIP/Postal code 02115
Country USA
Platform ID GPL571
Series (1)
GSE38290 Functional analysis of ABCB5 in melanoma cells

Data table header descriptions

Data table
AFFX-BioB-5_at 259.4 P 0.000662
AFFX-BioB-M_at 468.1 P 0.000081
AFFX-BioB-3_at 295.6 P 0.000169
AFFX-BioC-5_at 802.0 P 0.000060
AFFX-BioC-3_at 1083.2 P 0.000044
AFFX-BioDn-5_at 1456.1 P 0.000052
AFFX-BioDn-3_at 4443.3 P 0.000297
AFFX-CreX-5_at 11015.7 P 0.000052
AFFX-CreX-3_at 12602.1 P 0.000044
AFFX-DapX-5_at 2.1 A 0.603080
AFFX-DapX-M_at 17.6 A 0.205732
AFFX-DapX-3_at 2.6 A 0.983330
AFFX-LysX-5_at 16.8 A 0.165861
AFFX-LysX-M_at 2.2 A 0.876428
AFFX-LysX-3_at 12.1 A 0.354453
AFFX-PheX-5_at 1.7 A 0.904333
AFFX-PheX-M_at 1.6 A 0.953518
AFFX-PheX-3_at 27.9 A 0.368438
AFFX-ThrX-5_at 13.3 A 0.455413
AFFX-ThrX-M_at 2.4 A 0.749204

Total number of rows: 22277

Table truncated, full table size 596 Kbytes.

Supplementary file Size Download File type/resource
GSM938056_A375_ABCB5_KO1.CEL.gz 2.2 Mb (ftp)(http) CEL
GSM938056_MF2010021820.EXP.gz 376 b (ftp)(http) EXP
GSM938056_MF2010021820.TXT.gz 236.0 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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