NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM935342 Query DataSets for GSM935342
Status Public on May 22, 2012
Title Harvard_ChipSeq_HeLa-S3_TFIIIC-110_std
Sample type SRA
 
Source name HeLa-S3
Organism Homo sapiens
Characteristics lab: Harvard
lab description: Struhl - Harvard University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HeLa-S3
cell organism: human
cell description: cervical carcinoma
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: TFIIIC-110
antibody antibodydescription: rabbit polyclonal. Antibody Target: TFIIIC-110
antibody targetdescription: TFIIIC-110 is a subunit of the RNA Polymerase III transcription factor TFIIIC. Antiserum 4286 was raised by immunizing rabbits with synthetic peptide RPGFSPTSHRLLPTP (human TFIIIC110 residues 897 to 911) coupled to keyhole limpet hemocyanin.
antibody vendorname: Dr. Robert J. White, Beatson Institute for Cancer Research, UK
antibody vendorid: 4286
control: std
control description: Standard input signal for most experiments.
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000612
labversion: remapped from hg18
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX150422
BioSample SAMN01000883
Named Annotation GSM935342_hg19_wgEncodeSydhTfbsHelas3Tf3c110StdSig.bigWig

Supplementary file Size Download File type/resource
GSM935342_hg19_wgEncodeSydhTfbsHelas3Tf3c110StdPk.narrowPeak.gz 83.7 Kb (ftp)(http) NARROWPEAK
GSM935342_hg19_wgEncodeSydhTfbsHelas3Tf3c110StdSig.bigWig 442.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap