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Sample GSM935340 Query DataSets for GSM935340
Status Public on May 22, 2012
Title Harvard_ChipSeq_K562_ATF1_(06-325)_std
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics lab: Harvard
lab description: Struhl - Harvard University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: K562
cell organism: human
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: ATF1_(06-325)
antibody antibodydescription: Sheep polyclonal, immunogen: CPVTLTSQTTKTDDPQL. Antibody Target: ATF1
antibody targetdescription: ATF1 is a bZip transcription factor from the CREB family. ATF1 binds to both cAMP response elements (TGACGTCA).
antibody vendorname: Millipore
antibody vendorid: 06-325
control: std
control description: Standard input signal for most experiments.
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000615
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX150420
BioSample SAMN01000881
Named Annotation GSM935340_hg19_wgEncodeSydhTfbsK562Atf106325StdSig.bigWig

Supplementary file Size Download File type/resource
GSM935340_hg19_wgEncodeSydhTfbsK562Atf106325StdPk.narrowPeak.gz 814.2 Kb (ftp)(http) NARROWPEAK
GSM935340_hg19_wgEncodeSydhTfbsK562Atf106325StdSig.bigWig 410.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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