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Sample GSM935340 Query DataSets for GSM935340
Status Public on May 22, 2012
Title Harvard_ChipSeq_K562_ATF1_(06-325)_std
Sample type SRA
Source name K562
Organism Homo sapiens
Characteristics lab: Harvard
lab description: Struhl - Harvard University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: K562
cell organism: human
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: ATF1_(06-325)
antibody antibodydescription: Sheep polyclonal, immunogen: CPVTLTSQTTKTDDPQL. Antibody Target: ATF1
antibody targetdescription: ATF1 is a bZip transcription factor from the CREB family. ATF1 binds to both cAMP response elements (TGACGTCA).
antibody vendorname: Millipore
antibody vendorid: 06-325
control: std
control description: Standard input signal for most experiments.
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000615
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX150420
BioSample SAMN01000881
Named Annotation GSM935340_hg19_wgEncodeSydhTfbsK562Atf106325StdSig.bigWig

Supplementary file Size Download File type/resource
GSM935340_hg19_wgEncodeSydhTfbsK562Atf106325StdPk.narrowPeak.gz 814.2 Kb (ftp)(http) NARROWPEAK
GSM935340_hg19_wgEncodeSydhTfbsK562Atf106325StdSig.bigWig 410.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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