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Sample GSM935326 Query DataSets for GSM935326
Status Public on May 22, 2012
Title Stanford_ChipSeq_HeLa-S3_ELK1_(1277-1)_IgG-rab
Sample type SRA
 
Source name HeLa-S3
Organism Homo sapiens
Characteristics lab: Stanford
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HeLa-S3
cell organism: human
cell description: cervical carcinoma
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: ELK1_(1277-1)
antibody antibodydescription: Rabbit polyclonal, a synthetic peptide corresponding to residues in C-terminus of human ELK-1 was used as immunogen. The antibody does not cross-react with other ETS family members. Antibody Target: ELK1
antibody targetdescription: Elk-1 is a transcription factor that is part of the ets oncogene superfamily. Elk-1 forms a ternary complex with the serum response factors, SRE and SRF, mediating gene activity in response to serum and growth factors. Activation by several mitogen- activated protein kinases (Erk1 and Erk2) mediates the immediate early responses of the c-fos promoter to growth factors and other stimuli.
antibody vendorname: Epitomics
antibody vendorid: 1277-1
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: wgEncodeEH000744
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX150406
BioSample SAMN01000866
Named Annotation GSM935326_hg19_wgEncodeSydhTfbsHelas3Elk112771IggrabSig.bigWig

Supplementary file Size Download File type/resource
GSM935326_hg19_wgEncodeSydhTfbsHelas3Elk112771IggrabPk.narrowPeak.gz 470.5 Kb (ftp)(http) NARROWPEAK
GSM935326_hg19_wgEncodeSydhTfbsHelas3Elk112771IggrabSig.bigWig 398.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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