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Sample GSM935317 Query DataSets for GSM935317
Status Public on May 22, 2012
Title Yale_ChipSeq_HeLa-S3_c-Fos_std
Sample type SRA
Source name HeLa-S3
Organism Homo sapiens
Characteristics lab: Yale
lab description: Snyder - Yale University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HeLa-S3
cell organism: human
cell description: cervical carcinoma
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: c-Fos
antibody antibodydescription: Rabbit polyclonal to amino acids 210-335 mapping at the C-terminus of c-Fos of human origin. Antibody Target: c-Fos
antibody targetdescription: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-7202
control: std
control description: Standard input signal for most experiments.
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000612
labversion: Contains incomplete fastq files
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX150397
BioSample SAMN01000857
Named Annotation GSM935317_hg19_wgEncodeSydhTfbsHelas3CfosStdSig.bigWig

Supplementary file Size Download File type/resource
GSM935317_hg19_wgEncodeSydhTfbsHelas3CfosStdPk.narrowPeak.gz 184.3 Kb (ftp)(http) NARROWPEAK
GSM935317_hg19_wgEncodeSydhTfbsHelas3CfosStdSig.bigWig 287.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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