GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM935296 Query DataSets for GSM935296
Status Public on May 22, 2012
Title Stanford_ChipSeq_H1-hESC_CHD1_(A301-218A)_IgG-rab
Sample type SRA
Source name H1-hESC
Organism Homo sapiens
Characteristics lab: Stanford
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: H1-hESC
cell organism: human
cell description: embryonic stem cells
cell karyotype: normal
cell lineage: inner cell mass
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: CHD1_(A301-218A)
antibody antibodydescription: Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: CHD1
antibody targetdescription: CHD1 is a member of the CHD (chromodomain-helicase-DNA-binding) family of proteins that interacts with nucleosomes and plays a role in chromatin remodeling to modulate transcription. The members of the CHD family of proteins possess 3 common structural and functional domains: a chromodomain (chromatin organization modifier), an SNF2-like helicase/ATPase domain, and a C-terminal DNA-binding domain. CHD1 has been shown to interact with the transcriptional corepressor NCoR and histone deacetylase 1 indicating a role in transcriptional regulation. CHD1 has also been shown to interact with the Paf1 complex and Rtf1 implicating an additional role in transcriptional elongation. Alternate names for CHD1 include chromodomain-helicase-DNA-binding protein 1, ATP-dependent helicase CHD1, and DKFZp686E2337.
antibody vendorname: Bethyl Laboratories
antibody vendorid: A301-218A
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: wgEncodeEH001834
replicate: 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol H1_ES_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX150376
BioSample SAMN01000836
Named Annotation GSM935296_hg19_wgEncodeSydhTfbsH1hescChd1a301218aIggrabSig.bigWig

Supplementary file Size Download File type/resource
GSM935296_hg19_wgEncodeSydhTfbsH1hescChd1a301218aIggrabPk.narrowPeak.gz 359.9 Kb (ftp)(http) NARROWPEAK
GSM935296_hg19_wgEncodeSydhTfbsH1hescChd1a301218aIggrabSig.bigWig 388.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap