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Sample GSM935293 Query DataSets for GSM935293
Status Public on May 22, 2012
Title Stanford_ChipSeq_H1-hESC_Mxi1_(AF4185)_IgG-rab
Sample type SRA
Source name H1-hESC
Organism Homo sapiens
Characteristics lab: Stanford
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: H1-hESC
cell organism: human
cell description: embryonic stem cells
cell karyotype: normal
cell lineage: inner cell mass
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: Mxi1_(AF4185)
antibody antibodydescription: Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1
antibody targetdescription: Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX
antibody vendorname: R&D Systems
antibody vendorid: AF4185
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: wgEncodeEH001834
replicate: 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol H1_ES_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX150373
BioSample SAMN01000833
Named Annotation GSM935293_hg19_wgEncodeSydhTfbsH1hescMxi1IggrabSig.bigWig

Supplementary file Size Download File type/resource
GSM935293_hg19_wgEncodeSydhTfbsH1hescMxi1IggrabPk.narrowPeak.gz 582.2 Kb (ftp)(http) NARROWPEAK
GSM935293_hg19_wgEncodeSydhTfbsH1hescMxi1IggrabSig.bigWig 411.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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