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Sample GSM935293 Query DataSets for GSM935293
Status Public on May 22, 2012
Title Stanford_ChipSeq_H1-hESC_Mxi1_(AF4185)_IgG-rab
Sample type SRA
 
Source name H1-hESC
Organism Homo sapiens
Characteristics lab: Stanford
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: H1-hESC
cell organism: human
cell description: embryonic stem cells
cell karyotype: normal
cell lineage: inner cell mass
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: Mxi1_(AF4185)
antibody antibodydescription: Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1
antibody targetdescription: Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX
antibody vendorname: R&D Systems
antibody vendorid: AF4185
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: wgEncodeEH001834
replicate: 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol H1_ES_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX150373
BioSample SAMN01000833
Named Annotation GSM935293_hg19_wgEncodeSydhTfbsH1hescMxi1IggrabSig.bigWig

Supplementary file Size Download File type/resource
GSM935293_hg19_wgEncodeSydhTfbsH1hescMxi1IggrabPk.narrowPeak.gz 582.2 Kb (ftp)(http) NARROWPEAK
GSM935293_hg19_wgEncodeSydhTfbsH1hescMxi1IggrabSig.bigWig 411.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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