|
Status |
Public on May 22, 2012 |
Title |
Stanford_ChipSeq_GM12878_MAZ_(ab85725)_IgG-mus |
Sample type |
SRA |
|
|
Source name |
GM12878
|
Organism |
Homo sapiens |
Characteristics |
lab: Stanford lab description: Snyder - Stanford University datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: GM12878 cell organism: human cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus cell karyotype: normal cell lineage: mesoderm cell sex: F treatment: None treatment description: No special treatment or protocol applies antibody: MAZ_(ab85725) antibody antibodydescription: Rabbit polyclonal, immunogen is synthetic peptide, corresponding to a region within amino acids 427-477 of Human MAZ, GenBank BAA33064.1. Antibody Target: MAZ antibody targetdescription: May function as a transcription factor with dual roles in transcription initiation and termination. Binds to two sites, ME1a1 and ME1a2, within the MYC promoter having greater affinity for the former. Also binds to multiple G/C-rich sites within the promoter of the Sp1 family of transcription factors. antibody vendorname: Abcam antibody vendorid: ab85725 control: IgG-mus control description: Input signal from Normal Mouse IgG ChIP-seq. control: IgG-mus control description: Input signal from Normal Mouse IgG ChIP-seq. controlid: wgEncodeEH000706 replicate: 1
|
Biomaterial provider |
Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
|
Treatment protocol |
None
|
Growth protocol |
GM12878_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
|
|
Submission date |
May 22, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (2) |
GSE31477 |
ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
SRA |
SRX150363 |
BioSample |
SAMN01000823 |
Named Annotation |
GSM935283_hg19_wgEncodeSydhTfbsGm12878Mazab85725IggmusSig.bigWig |