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Sample GSM927323 Query DataSets for GSM927323
Status Public on May 10, 2013
Title Non-smoker female, NSCLC, smRNA-Seq [P3T]
Sample type SRA
 
Source name Non-smoker female, NSCLC
Organism Homo sapiens
Characteristics disease: Adenocarcinoma, NSCLC
patient: 3
tissue type: tumor
Stage: IIB
gender: female
age: 53 years
smoker: non-smoker
Treatment protocol Qiagen miRNeasy kit (Cat. 217004)
Extracted molecule total RNA
Extraction protocol Purified total RNA was processed by illumina small RNA sample preparation kit. Before sequencing, small RNA library, from 22nt and 30nt small RNA fragment, was selected from PAGE gel. Sequencing was performed at Illumina Genome Analyzer IIx, 36bp single read sequencing.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer IIx
 
Description 53 years; female; a non-smoker
Data processing Basecalls performed using Illumina Genome AnalyzerIIx
Mapped to hg19 whole genome using bowtie v0.12.7 with parameters -a -v 0
Expression level is calculated by counting reads
Supplementary_files_format_and_content: text
 
Submission date May 04, 2012
Last update date May 15, 2019
Contact name Sanghyuk Lee
E-mail(s) sanghyuk@ewha.ac.kr
Phone +82-42-879-8511
Fax +82-42-879-8519
URL http://www.kobic.re.kr
Organization name KRIBB
Department KOBIC
Street address 125 Gwahak-ro
City Daejeon
ZIP/Postal code 305-806
Country South Korea
 
Platform ID GPL10999
Series (2)
GSE37764 A high dimensional deep sequencing study of non-small cell lung adenocarcinoma in never-smoker Korean females [Seq]
GSE37765 A high dimensional deep sequencing study of non-small cell lung adenocarcinoma in never-smoker Korean females
Relations
SRA SRX145891
BioSample SAMN00990844

Supplementary data files not provided
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA

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