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Sample GSM927164 Query DataSets for GSM927164
Status Public on Nov 01, 2013
Title Tumor 32
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIB
tumor grade: 2
node status: N1
survival (months): 27
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.762974928
cg00000108 3.23379486
cg00000109 2.116438372
cg00000165 -1.158030942
cg00000236 2.119676863
cg00000289 0.809181495
cg00000292 0.81091103
cg00000321 -1.035388205
cg00000363 -1.25428454
cg00000622 -4.666022612
cg00000658 1.903659511
cg00000714 -2.054579466
cg00000721 3.164911513
cg00000734 -2.327950285
cg00000769 -3.102218416
cg00000807 1.921142018
cg00000884 1.918901129
cg00000905 -2.463056517
cg00000924 0.386985197
cg00000948 2.213649353

Total number of rows: 485577

Table truncated, full table size 11080 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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