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Sample GSM927163 Query DataSets for GSM927163
Status Public on Nov 01, 2013
Title Tumor 31
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIA
node status: N0
survival (months): 38
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.302006696
cg00000108 3.556426775
cg00000109 2.582526033
cg00000165 1.043207019
cg00000236 2.657178559
cg00000289 1.19771051
cg00000292 1.168266577
cg00000321 0.16626106
cg00000363 -1.280444043
cg00000622 -4.704274447
cg00000658 2.130132705
cg00000714 -1.548385946
cg00000721 3.400482108
cg00000734 -2.532471274
cg00000769 -3.323062073
cg00000807 1.787966301
cg00000884 2.364757723
cg00000905 -2.504501659
cg00000924 -0.148406297
cg00000948 2.990403391

Total number of rows: 485577

Table truncated, full table size 11065 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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