GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM927162 Query DataSets for GSM927162
Status Public on Nov 01, 2013
Title Tumor 30
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 66
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: IIB
tumor grade: 2
node status: N1
survival (months): 41
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.550267639
cg00000108 3.117033998
cg00000109 2.275377421
cg00000165 0.004586637
cg00000236 2.647913328
cg00000289 1.155910113
cg00000292 0.206453778
cg00000321 -0.588262578
cg00000363 0.054659447
cg00000622 -4.120856333
cg00000658 1.886182301
cg00000714 -1.944550974
cg00000721 2.995487451
cg00000734 -2.481431205
cg00000769 -3.332346463
cg00000807 1.818058156
cg00000884 2.117396775
cg00000905 -2.697376654
cg00000924 0.699627675
cg00000948 2.968574837

Total number of rows: 485577

Table truncated, full table size 11075 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap