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Sample GSM927161 Query DataSets for GSM927161
Status Public on Nov 01, 2013
Title Tumor 29
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 46
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIA
tumor grade: 2
node status: N1
survival (months): 43
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.609119757
cg00000108 3.533628947
cg00000109 2.05980716
cg00000165 -1.274334187
cg00000236 2.529284664
cg00000289 1.254558922
cg00000292 1.322888837
cg00000321 -0.59737415
cg00000363 -1.719827215
cg00000622 -4.64481138
cg00000658 2.41337488
cg00000714 -2.206647508
cg00000721 3.247488641
cg00000734 -2.161548572
cg00000769 -3.166922197
cg00000807 2.562404347
cg00000884 2.411133823
cg00000905 -2.86490947
cg00000924 0.322619779
cg00000948 3.290833745

Total number of rows: 485577

Table truncated, full table size 11073 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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