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Sample GSM927158 Query DataSets for GSM927158
Status Public on Nov 01, 2013
Title Tumor 27
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 36
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIIA
tumor grade: 3
node status: N1
survival (months): 48
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.314032995
cg00000108 3.53156773
cg00000109 2.648977569
cg00000165 -1.662756839
cg00000236 2.797633495
cg00000289 0.855919049
cg00000292 0.329115511
cg00000321 -1.49101272
cg00000363 -1.371528592
cg00000622 -4.446861532
cg00000658 2.263286269
cg00000714 -1.838376477
cg00000721 2.994762811
cg00000734 -2.619772954
cg00000769 -3.406980874
cg00000807 1.578703312
cg00000884 2.44997741
cg00000905 -2.182821712
cg00000924 0.384910242
cg00000948 2.826103697

Total number of rows: 485577

Table truncated, full table size 11095 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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