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Sample GSM927157 Query DataSets for GSM927157
Status Public on Nov 01, 2013
Title Tumor 66
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 38
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIA
tumor grade: 2
node status: N0
survival (months): 50
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.185548736
cg00000108 3.781542382
cg00000109 2.426975351
cg00000165 -1.682990623
cg00000236 2.412997383
cg00000289 1.029067994
cg00000292 0.383591399
cg00000321 -0.343762504
cg00000363 -1.440144676
cg00000622 -4.63465864
cg00000658 2.122817318
cg00000714 -2.329211778
cg00000721 3.363452373
cg00000734 -2.513654227
cg00000769 -3.430002989
cg00000807 2.444208083
cg00000884 2.651102152
cg00000905 -2.802280482
cg00000924 0.653042792
cg00000948 2.299137526

Total number of rows: 485577

Table truncated, full table size 11078 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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