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Sample GSM927156 Query DataSets for GSM927156
Status Public on Nov 01, 2013
Title Tumor 65
Sample type genomic
 
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 46
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: I
tumor grade: 2
node status: N0
survival (months): 50
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
 
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
ID_REF
VALUE M Values

Data table
ID_REF VALUE
cg00000029 -1.426840558
cg00000108 3.883702633
cg00000109 1.783241969
cg00000165 -1.398122116
cg00000236 2.512331887
cg00000289 1.213528412
cg00000292 0.96473376
cg00000321 -1.617319474
cg00000363 -1.770662969
cg00000622 -4.636811134
cg00000658 2.117061678
cg00000714 -2.194596647
cg00000721 3.355794173
cg00000734 -2.576547184
cg00000769 -3.295211628
cg00000807 2.603763713
cg00000884 2.30203701
cg00000905 -2.857409574
cg00000924 0.74562671
cg00000948 3.474241647

Total number of rows: 485577

Table truncated, full table size 11078 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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