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Sample GSM927154 Query DataSets for GSM927154
Status Public on Nov 01, 2013
Title Tumor 25
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 57
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIIA
tumor grade: 2
node status: N1
survival (months): 10
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.385323757
cg00000108 3.583396818
cg00000109 2.486828853
cg00000165 -1.138330028
cg00000236 2.598511782
cg00000289 0.963612026
cg00000292 0.920923306
cg00000321 -0.98319815
cg00000363 -0.350012505
cg00000622 -4.662643123
cg00000658 2.092916146
cg00000714 -1.598448902
cg00000721 3.083017398
cg00000734 -2.810911064
cg00000769 -3.841004862
cg00000807 1.715586352
cg00000884 2.437110131
cg00000905 -2.637547578
cg00000924 0.623939721
cg00000948 2.902107666

Total number of rows: 485577

Table truncated, full table size 11072 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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