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Sample GSM927152 Query DataSets for GSM927152
Status Public on Nov 01, 2013
Title Normal 24
Sample type genomic
Source name Human Breast
Organism Homo sapiens
Characteristics race: African-American
age: 51
tissue type: Non-tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.444974648
cg00000108 3.246465796
cg00000109 2.390994684
cg00000165 -0.862473969
cg00000236 1.977118347
cg00000289 1.073908945
cg00000292 1.787571587
cg00000321 -0.002594345
cg00000363 -0.891664882
cg00000622 -5.005604211
cg00000658 2.362648867
cg00000714 -2.206340641
cg00000721 2.995411627
cg00000734 -2.455010489
cg00000769 -3.537516211
cg00000807 2.12559733
cg00000884 2.002034709
cg00000905 -2.58736415
cg00000924 0.465845219
cg00000948 2.23887565

Total number of rows: 485577

Table truncated, full table size 11078 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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