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Sample GSM927151 Query DataSets for GSM927151
Status Public on Nov 01, 2013
Title Tumor 64
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 44
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: I
node status: N0
survival (months): 51
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.561484387
cg00000108 3.713829031
cg00000109 1.972031769
cg00000165 -1.069732533
cg00000236 2.594091388
cg00000289 1.071396559
cg00000292 1.400159166
cg00000321 -1.294283227
cg00000363 -1.030147039
cg00000622 -4.553331024
cg00000658 2.258609148
cg00000714 -1.806913106
cg00000721 3.396504748
cg00000734 -2.920839881
cg00000769 -3.092001268
cg00000807 2.009006604
cg00000884 2.544219685
cg00000905 -2.779745372
cg00000924 0.724226043
cg00000948 3.096868866

Total number of rows: 485577

Table truncated, full table size 11072 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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