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Sample GSM927150 Query DataSets for GSM927150
Status Public on Nov 01, 2013
Title Tumor 63
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 36
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIB
tumor grade: 3
node status: N0
survival (months): 54
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.408293922
cg00000108 3.529330257
cg00000109 2.479010515
cg00000165 -1.173902829
cg00000236 2.451412712
cg00000289 0.993336933
cg00000292 0.373968415
cg00000321 -0.958774638
cg00000363 -1.133879723
cg00000622 -4.879902312
cg00000658 2.231356323
cg00000714 -1.662620957
cg00000721 3.100762076
cg00000734 -2.758915305
cg00000769 -3.397436359
cg00000807 1.689402339
cg00000884 2.386356797
cg00000905 -2.686252551
cg00000924 0.388632171
cg00000948 2.191488658

Total number of rows: 485577

Table truncated, full table size 11078 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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