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Sample GSM927149 Query DataSets for GSM927149
Status Public on Nov 01, 2013
Title Tumor 62
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 47
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: IIIA
tumor grade: 3
node status: N1
survival (months): 55
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 0.215207228
cg00000108 3.36898116
cg00000109 2.795134055
cg00000165 -0.780190311
cg00000236 2.456987976
cg00000289 1.273336911
cg00000292 2.196088083
cg00000321 0.00473507
cg00000363 -0.990040423
cg00000622 -4.579787356
cg00000658 2.035827942
cg00000714 -1.5002129
cg00000721 3.037719636
cg00000734 -2.815885935
cg00000769 -3.611261215
cg00000807 1.754743549
cg00000884 2.374425473
cg00000905 -2.535654308
cg00000924 0.561571553
cg00000948 2.308012669

Total number of rows: 485577

Table truncated, full table size 11071 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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